Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7208889 chr17:59495553 C/T 6.07E-7 178 25.67 24.5 9.6 KM Plot
PCPG rs72129796 chr14:74502559 TCACA/T 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs72151676 chr13:37551950 AAC/A 0.000327 176 4.17 24.17 25.87 KM Plot
PCPG rs7215188 chr17:80509479 C/T 4.21E-5 178 25.97 19.72 7.2 KM Plot
PCPG rs7224708 chr17:75782839 A/G 0.000194 178 16.18 27.27 25.4 KM Plot
PCPG rs7244542 chr18:74544977 C/T 4.53E-9 178 25.6 25.52 10.17 KM Plot
PCPG rs7247294 chr19:29279929 A/G 0.000475 172 26.57 20.37 11.22 KM Plot
PCPG rs72477006 chr16:89950299 G/C 0.000205 174 25.6 22.63 3.17 KM Plot
PCPG rs72477008 chr16:90074356 G/C 8.43E-9 176 25.92 20.28 6.62 KM Plot
PCPG rs72526691 chr16:1695056 T/TAC 4.76E-5 176 24.85 30.25 19.83 KM Plot
PCPG rs72631328 chr17:65794705 G/A 0.000472 176 24.5 36 8.22 KM Plot
PCPG rs72640848 chr8:53836225 A/G 0.000375 175 24.7 27.33 6.1 KM Plot
PCPG rs72640849 chr8:53836430 A/T 0.00039 175 24.7 27.2 6.1 KM Plot
PCPG rs72640850 chr8:53836681 A/C 0.000414 174 24.47 27.2 6.1 KM Plot
PCPG rs72640852 chr8:53838084 G/A 0.000429 173 24.7 27.2 6.1 KM Plot